Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs78553639 | chr7:30078628 | C/CAT | 8.0E-5 | 484 | 15.07 | 16.63 | 12.93 | KM Plot |
| THCA | rs78566881 | chr7:43926039 | T/C | 0.000139 | 475 | 15.95 | 15.97 | 16.47 | KM Plot |
| THCA | rs78573204 | chr3:96809412 | A/G | 2.34E-10 | 489 | 15.93 | 15.17 | 24.65 | KM Plot |
| THCA | rs78578594 | chr6:25364645 | C/T | 6.77E-15 | 485 | 15.17 | 22.67 | 16.72 | KM Plot |
| THCA | rs78580207 | chr14:59610076 | A/T | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs7860463 | chr9:15853131 | C/G | 3.14E-5 | 489 | 7.3 | 16.57 | 15.83 | KM Plot |
| THCA | rs78614960 | chr5:81282372 | T/A | 8.87E-5 | 486 | 15.9 | 16.3 | 17.97 | KM Plot |
| THCA | rs78617092 | chr6:24432575 | C/T | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs7862013 | chr9:94687785 | A/C | 1.58E-12 | 488 | 15.9 | 16.4 | 14.98 | KM Plot |
| THCA | rs78626699 | chr14:59786434 | T/A | 2.46E-7 | 486 | 16.38 | 12.7 | 5.8 | KM Plot |
| THCA | rs78631050 | chr3:53941096 | A/G | 4.44E-15 | 488 | 15.83 | 17.6 | 10.35 | KM Plot |
| THCA | rs7866775 | chr9:94684859 | C/T | 1.58E-12 | 487 | 15.93 | 16.4 | 14.98 | KM Plot |
| THCA | rs78694223 | chr14:59763691 | AGAGT/A | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs78721070 | chr6:24411018 | A/G | 4.77E-15 | 489 | 16.38 | 14.85 | 11.07 | KM Plot |
| THCA | rs78734698 | chr10:81756449 | G/A | 0.000111 | 487 | 15.97 | 16.57 | 9.77 | KM Plot |